PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.12NGZ
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 1216aa    MW: 134513 Da    PI: 9.6411
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.12NGZgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.63e-0899134340
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 
                       W++eE e +++a +++G++ Wk+++  +  +R+ +++
      Aradu.12NGZ  99 QWSKEELEHFYEAYRKYGKD-WKKVSLAVR-NRSVEMV 134
                      6*****************99.*********.**98876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.0795148IPR017884SANT domain
SuperFamilySSF466891.94E-996143IPR009057Homeodomain-like
SMARTSM007170.001896144IPR001005SANT/Myb domain
PfamPF002494.1E-799134IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-499133IPR009057Homeodomain-like
CDDcd001673.04E-5100134No hitNo description
PfamPF065841.3E-31679779IPR033471DIRP domain
SMARTSM011352.3E-53679780IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1216 aa     Download sequence    Send to blast
RFQSDPSTES LLRLQFAISV LYDREKRDSI SVFGHLEQTL EPQIMAPSKK SRSVNKRFPN  60
VREAALSKDK NAENASKNKQ KASPGTQKKR KLADMLGPQW SKEELEHFYE AYRKYGKDWK  120
KVSLAVRNRS VEMVEALYTM NRAYLSLPEG TASVVGLIAM MTDHYSVLGG SDSEKESNED  180
AEVSKRSQKR LRRKQMNDHK TLEGPFSDHS QSQSVASGDG CLSLLKTRNS GLTPHAVRKR  240
TPRVPISHSI GKDNAEKLFS SARQGRKQMV DTNDVTHKIA LALAEASQRG GSSKISASPN  300
KRAAPSPSKK SGKKVKSEIA GSKFCSSDLD GGSSELSLGS TEGDNGDYNR KTVNWTSREN  360
TGKGRSREKR VKHTGNNLEP EESLNMHLDE IKEASSGTDD GKNLNFIKSN FSTDFANAKN  420
PSPSSYKGSK KRSKKLQVEK DEASAFDALK TLADLSLMMP VTNADSESSA QVREGNHDVE  480
ESKVKMHKAT KIERTASSAL GKIFSDGAAI PEGEGVNQLN AGIRKRKQKS FSLNNDETHT  540
DSHLSGSQKI KDTDEVKKSM VKGKRSSVST TYPRQPKVVK SPGKMSSSGN DKREGDDSTS  600
SPIKVSSANQ VGQVNKGRPR RKMGKPKPMA EGDPVVSGNI FSSQHNKSCA SVQNSSSSPK  660
LINCLSSHQA RRWCTFEWFY SAIDYPWFSK REFVEYLDHV GLGHVPRLTR IEWGVIRSSL  720
GKPRRFSEQF LIEEKQKLNQ YRESVRSHYA EVLAGTKEGL PTDLARPLIV GQRVIAIHPK  780
TREIHNGSIL TVDHCRCLVQ FDQRELGAEF VMDIDCMPMY PFENMPTSMA RHHIAHCRIN  840
ETFNDLRLNG KLKQEIIADH TILSPSETID TTKGLHILPT KHGSSTLSNQ GVSPNSKSQV  900
KAMCNQICNA QQAPSLQPFP FEHVHSKEAD ISAISELTRA LDKKELVMSE LKVMNDGVSE  960
SQKYGDNSLK DSEPFKRSYA SLIKHLTEVS SALFRLRQRN TYQGSTTELS LKPIANYDDP  1020
GGQASSSNCS ACHNQESIPL GHIAEIVESS RRKARAMVVQ ATQAMSIFMK TDSKVEKIED  1080
AINFINNQLS VDDPAAPATN SLPADSIHVT LASQDQLTGN TLNPSVNCHA QDAEFNSSSD  1140
QNEMKIPSEL ISHCLATLLM IQKCTERQFP PADVAQVLDS AVTSLQPFCS KNLPIYGEIQ  1200
KCMGIIRNQI LALIPT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1617621RPRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015938766.10.0PREDICTED: LOW QUALITY PROTEIN: protein ALWAYS EARLY 3-like
TrEMBLA0A0B2P6S50.0A0A0B2P6S5_GLYSO; Protein ALWAYS EARLY 3
STRINGGLYMA17G02741.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17833369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding